MIMI Documentation

MIMI (Molecular Isotope Mass Identifier) is a powerful tool for analyzing isotope-labeled FT-ICR mass spectrometry data, developed in the Center for Genomics and Systems Biology (CGSB) at New York University Abu Dhabi (NYUAD). The source repository is available on GitHub: NYUAD-Core-Bioinformatics/MIMI.

Contents:

• About MIMI
  • Key Features
  • License
  • Repository
  • Report Issues
• Usage Guide
  • Installation
  • Workflow Overview
  • Step1: Database Preparation
  • Step2: Cache Creation
  • Step3: Sample Analysis
  • Comprehensive Analysis Runs
  • Performance Analysis
  • Complete Example
  • Troubleshooting
• Architecture Design
  • Overview
  • Detailed Flow Diagram
  • Core Components
  • Data Flow
  • Key Design Principles
  • Implementation Details
• Command Reference
  • mimi_kegg_extract
  • mimi_hmdb_extract
  • mimi_cache_create
  • mimi_cache_dump
  • mimi_mass_analysis
• mimi package
  • mimi.analysis module
  • mimi.atom module
  • mimi.molecule module
• License

Indices and tables

• Index

• Module Index

• Search Page